TAP SWI/SNF_SNF2 in Capsella grandiflora

Full lineage¹: cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Protein source: Phytozome (proteins from primary transcripts)


The colour code corresponds to the rules for the domains:

should be contained
should not be contained

Domain rules

SNF2_N
AP2
PHD
zf-CCCH
HMG_box
Myb_DNA-binding

(Domain names are clickable)



List of proteins (38)

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namename additionClick button to show/hide sequence: Download sequence?
Cagra.0050s0096.1.ppacid=28917076 transcript=Cagra.0050s0096.1 locus=Cagra.0050s0096 ID=Cagra.0050s0096.1.v1.1 annot-version=v1.1
Cagra.0179s0024.1.ppacid=28909714 transcript=Cagra.0179s0024.1 locus=Cagra.0179s0024 ID=Cagra.0179s0024.1.v1.1 annot-version=v1.1
Cagra.0239s0051.1.ppacid=28915429 transcript=Cagra.0239s0051.1 locus=Cagra.0239s0051 ID=Cagra.0239s0051.1.v1.1 annot-version=v1.1
Cagra.0248s0076.1.ppacid=28918901 transcript=Cagra.0248s0076.1 locus=Cagra.0248s0076 ID=Cagra.0248s0076.1.v1.1 annot-version=v1.1
Cagra.0316s0066.1.ppacid=28915702 transcript=Cagra.0316s0066.1 locus=Cagra.0316s0066 ID=Cagra.0316s0066.1.v1.1 annot-version=v1.1
Cagra.0389s0011.1.ppacid=28916352 transcript=Cagra.0389s0011.1 locus=Cagra.0389s0011 ID=Cagra.0389s0011.1.v1.1 annot-version=v1.1
Cagra.0454s0007.1.ppacid=28909964 transcript=Cagra.0454s0007.1 locus=Cagra.0454s0007 ID=Cagra.0454s0007.1.v1.1 annot-version=v1.1
Cagra.0562s0019.1.ppacid=28910811 transcript=Cagra.0562s0019.1 locus=Cagra.0562s0019 ID=Cagra.0562s0019.1.v1.1 annot-version=v1.1
Cagra.0562s0038.1.ppacid=28910821 transcript=Cagra.0562s0038.1 locus=Cagra.0562s0038 ID=Cagra.0562s0038.1.v1.1 annot-version=v1.1
Cagra.0568s0009.1.ppacid=28911066 transcript=Cagra.0568s0009.1 locus=Cagra.0568s0009 ID=Cagra.0568s0009.1.v1.1 annot-version=v1.1
Cagra.0712s0028.1.ppacid=28899886 transcript=Cagra.0712s0028.1 locus=Cagra.0712s0028 ID=Cagra.0712s0028.1.v1.1 annot-version=v1.1
Cagra.0808s0011.1.ppacid=28909019 transcript=Cagra.0808s0011.1 locus=Cagra.0808s0011 ID=Cagra.0808s0011.1.v1.1 annot-version=v1.1
Cagra.0860s0006.1.ppacid=28901404 transcript=Cagra.0860s0006.1 locus=Cagra.0860s0006 ID=Cagra.0860s0006.1.v1.1 annot-version=v1.1
Cagra.0891s0035.1.ppacid=28912960 transcript=Cagra.0891s0035.1 locus=Cagra.0891s0035 ID=Cagra.0891s0035.1.v1.1 annot-version=v1.1
Cagra.0897s0010.1.ppacid=28902820 transcript=Cagra.0897s0010.1 locus=Cagra.0897s0010 ID=Cagra.0897s0010.1.v1.1 annot-version=v1.1
Cagra.0922s0007.1.ppacid=28901610 transcript=Cagra.0922s0007.1 locus=Cagra.0922s0007 ID=Cagra.0922s0007.1.v1.1 annot-version=v1.1
Cagra.0932s0007.1.ppacid=28918594 transcript=Cagra.0932s0007.1 locus=Cagra.0932s0007 ID=Cagra.0932s0007.1.v1.1 annot-version=v1.1
Cagra.1504s0018.1.ppacid=28910302 transcript=Cagra.1504s0018.1 locus=Cagra.1504s0018 ID=Cagra.1504s0018.1.v1.1 annot-version=v1.1
Cagra.1642s0043.1.ppacid=28898806 transcript=Cagra.1642s0043.1 locus=Cagra.1642s0043 ID=Cagra.1642s0043.1.v1.1 annot-version=v1.1
Cagra.1671s0134.1.ppacid=28914304 transcript=Cagra.1671s0134.1 locus=Cagra.1671s0134 ID=Cagra.1671s0134.1.v1.1 annot-version=v1.1
Cagra.1671s0175.1.ppacid=28913919 transcript=Cagra.1671s0175.1 locus=Cagra.1671s0175 ID=Cagra.1671s0175.1.v1.1 annot-version=v1.1
Cagra.1772s0022.1.ppacid=28906936 transcript=Cagra.1772s0022.1 locus=Cagra.1772s0022 ID=Cagra.1772s0022.1.v1.1 annot-version=v1.1
Cagra.1917s0006.1.ppacid=28906377 transcript=Cagra.1917s0006.1 locus=Cagra.1917s0006 ID=Cagra.1917s0006.1.v1.1 annot-version=v1.1
Cagra.2007s0023.1.ppacid=28908641 transcript=Cagra.2007s0023.1 locus=Cagra.2007s0023 ID=Cagra.2007s0023.1.v1.1 annot-version=v1.1
Cagra.21883s0002.1.ppacid=28895242 transcript=Cagra.21883s0002.1 locus=Cagra.21883s0002 ID=Cagra.21883s0002.1.v1.1 annot-version=v1.1
Cagra.2213s0005.1.ppacid=28917228 transcript=Cagra.2213s0005.1 locus=Cagra.2213s0005 ID=Cagra.2213s0005.1.v1.1 annot-version=v1.1
Cagra.2257s0002.1.ppacid=28916834 transcript=Cagra.2257s0002.1 locus=Cagra.2257s0002 ID=Cagra.2257s0002.1.v1.1 annot-version=v1.1
Cagra.2925s0010.1.ppacid=28896693 transcript=Cagra.2925s0010.1 locus=Cagra.2925s0010 ID=Cagra.2925s0010.1.v1.1 annot-version=v1.1
Cagra.2961s0047.1.ppacid=28897473 transcript=Cagra.2961s0047.1 locus=Cagra.2961s0047 ID=Cagra.2961s0047.1.v1.1 annot-version=v1.1
Cagra.3258s0004.1.ppacid=28898058 transcript=Cagra.3258s0004.1 locus=Cagra.3258s0004 ID=Cagra.3258s0004.1.v1.1 annot-version=v1.1
Cagra.3628s0010.1.ppacid=28900531 transcript=Cagra.3628s0010.1 locus=Cagra.3628s0010 ID=Cagra.3628s0010.1.v1.1 annot-version=v1.1
Cagra.3807s0062.1.ppacid=28899178 transcript=Cagra.3807s0062.1 locus=Cagra.3807s0062 ID=Cagra.3807s0062.1.v1.1 annot-version=v1.1
Cagra.3954s0005.1.ppacid=28903031 transcript=Cagra.3954s0005.1 locus=Cagra.3954s0005 ID=Cagra.3954s0005.1.v1.1 annot-version=v1.1
Cagra.4243s0015.1.ppacid=28909163 transcript=Cagra.4243s0015.1 locus=Cagra.4243s0015 ID=Cagra.4243s0015.1.v1.1 annot-version=v1.1
Cagra.4395s0050.1.ppacid=28898386 transcript=Cagra.4395s0050.1 locus=Cagra.4395s0050 ID=Cagra.4395s0050.1.v1.1 annot-version=v1.1
Cagra.5641s0046.1.ppacid=28908434 transcript=Cagra.5641s0046.1 locus=Cagra.5641s0046 ID=Cagra.5641s0046.1.v1.1 annot-version=v1.1
Cagra.5742s0007.1.ppacid=28905203 transcript=Cagra.5742s0007.1 locus=Cagra.5742s0007 ID=Cagra.5742s0007.1.v1.1 annot-version=v1.1
Cagra.6946s0002.1.ppacid=28909947 transcript=Cagra.6946s0002.1 locus=Cagra.6946s0002 ID=Cagra.6946s0002.1.v1.1 annot-version=v1.1
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A list of species letter codes included in the protein names can be found here (opens in new tab).

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¹ Information recieved using NCBI E-utilities and NCBI taxonomy database.
Impressum